Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019975.1 Corchorus olitorius cultivar O-4 contig20008, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1706
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.28


Found at i:1273 original size:21 final size:21

Alignment explanation


    Indices: 1247--1321  Score: 105
    Period size: 21  Copynumber: 3.6  Consensus size: 21

       1237 AAGATGCTAG

                           *     
       1247 AAGTTCATTGGAGAATGTTCC
          1 AAGTTCATTGGAGAAGGTTCC

                                 
       1268 AAGTTCATTGGAGAAGGTTCC
          1 AAGTTCATTGGAGAAGGTTCC

              **               * 
       1289 AAAATCATTGGAGAAGGTTTC
          1 AAGTTCATTGGAGAAGGTTCC

               *        
       1310 AAGCTCATTGGA
          1 AAGTTCATTGGA

       1322 ATTGCCTAAG


Statistics
Matches: 48,  Mismatches: 6, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   48  1.00

ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29


Consensus pattern (21 bp):   
AAGTTCATTGGAGAAGGTTCC
Done.