Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019979.1 Corchorus olitorius cultivar O-4 contig20012, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2314
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1897 original size:16 final size:16

Alignment explanation


    Indices: 1876--1914  Score: 60
    Period size: 16  Copynumber: 2.4  Consensus size: 16

       1866 AGGTTGACAG

                            
       1876 AAAACAATTAAACAAA
          1 AAAACAATTAAACAAA

                         * *
       1892 AAAACAATTAAACTAG
          1 AAAACAATTAAACAAA

                   
       1908 AAAACAA
          1 AAAACAA

       1915 AACAAAGTAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  16   21  1.00

ACGTcount: A:0.72, C:0.13, G:0.03, T:0.13


Consensus pattern (16 bp):   
AAAACAATTAAACAAA
Done.