Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001998.1 Corchorus olitorius cultivar O-4 contig01998, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1152
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26


Found at i:561 original size:24 final size:24

Alignment explanation


    Indices: 534--580  Score: 67
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        524 CCATGAATGT

                              *     
        534 GGTGCCACACTTTCCCATTCAGAG
          1 GGTGCCACACTTTCCCATACAGAG

                    **             
        558 GGTGCCACTTTTTCCCATACAGA
          1 GGTGCCACACTTTCCCATACAGA

        581 TCGTATGCCA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28


Consensus pattern (24 bp):   
GGTGCCACACTTTCCCATACAGAG
Done.