Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019981.1 Corchorus olitorius cultivar O-4 contig20014, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35977

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
530--554
13
1.9
13
100
0
50
68
8
16
8
1.38
2989--3035
22
2.2
22
88
3
69
17
17
48
17
1.81
5494--5551
30
2.0
29
86
10
82
41
13
6
37
1.72
6002--6044
16
2.7
15
89
10
68
67
13
6
11
1.41
13214--13254
21
2.0
21
90
0
64
34
24
7
34
1.83
18569--18622
19
2.6
21
77
19
60
38
18
3
38
1.69
19045--19074
15
2.0
15
93
0
51
43
13
13
30
1.82
19962--20028
31
2.2
31
89
5
102
49
10
19
20
1.77
20158--20269
31
3.6
31
82
2
136
33
17
12
36
1.88
21018--21155
70
2.0
70
98
0
267
42
2
18
36
1.62
22011--22120
31
3.6
31
86
2
143
42
10
16
30
1.82
22237--22303
31
2.2
31
89
5
102
22
19
10
47
1.79
25378--25454
22
3.7
20
81
13
75
22
24
11
41
1.87
25426--25481
22
2.5
22
82
2
67
17
30
12
39
1.87
30832--30872
21
2.0
21
90
9
66
34
9
24
31
1.88

Tables:   1

The End!