Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019989.1 Corchorus olitorius cultivar O-4 contig20022, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27978

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6899--6944
24
2.0
23
86
4
65
56
8
17
17
1.65
7288--7354
16
4.1
16
81
9
82
22
2
20
53
1.59
7280--7353
34
2.2
34
92
2
123
20
4
21
54
1.61
7850--7885
2
18.0
2
100
0
72
50
0
0
50
1.00
7903--7974
36
2.0
36
97
0
135
34
22
9
33
1.87
8013--8042
8
3.8
8
95
0
51
0
16
0
83
0.65
8763--8893
39
3.4
38
84
4
163
40
15
16
27
1.89
20304--20381
39
2.0
39
94
0
138
34
28
7
29
1.85
20890--21433
113
4.8
114
88
4
841
33
16
22
27
1.95
20890--21433
226
2.4
227
94
2
950
33
16
22
27
1.95
23441--23567
33
3.9
32
84
5
148
31
18
22
26
1.97
23462--23567
33
3.2
33
91
0
167
32
19
22
25
1.98
23441--23567
66
1.9
65
87
4
184
31
18
22
26
1.97

Tables:   1

The End!