Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019990.1 Corchorus olitorius cultivar O-4 contig20023, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41567

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3179--3228
25
2.0
25
100
0
100
32
16
12
40
1.84
3715--3908
75
2.6
75
94
0
343
20
18
42
18
1.89
5994--6058
30
2.2
30
91
5
105
43
9
20
27
1.82
6992--7143
51
3.0
51
92
4
240
20
19
40
19
1.91
9249--9298
26
2.0
26
96
4
84
28
6
20
46
1.74
9249--9298
25
2.0
26
96
4
93
28
6
20
46
1.74
13115--13144
14
2.1
15
93
6
53
50
23
0
26
1.50
13599--13628
2
15.0
2
100
0
60
50
0
0
50
1.00
15129--15241
58
1.9
58
85
7
158
32
13
20
33
1.91
16515--16584
36
1.9
36
88
5
106
20
10
10
60
1.57
17100--17512
204
2.0
204
93
1
713
44
8
11
36
1.71
17621--17701
39
2.0
40
92
2
137
37
3
8
50
1.51
18714--18790
22
3.5
22
82
1
84
41
14
7
36
1.75
18710--18810
43
2.3
44
84
1
123
40
14
8
35
1.78
29648--29691
23
2.0
23
82
13
56
54
13
15
15
1.71
33408--33871
178
2.6
177
83
2
538
33
14
17
34
1.90
37441--37494
18
3.0
18
88
0
72
33
29
25
11
1.91
40141--40221
40
2.0
40
92
4
137
39
17
12
30
1.86

Tables:   1

The End!