Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019994.1 Corchorus olitorius cultivar O-4 contig20027, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51762

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
843--870
12
2.3
12
100
0
56
39
7
7
46
1.59
1814--1869
27
2.1
27
100
0
112
39
21
3
35
1.71
3974--4080
48
2.3
46
85
3
142
23
18
5
52
1.66
4011--4114
48
2.2
47
81
5
111
27
16
6
49
1.71
6839--6868
14
2.2
13
94
5
51
20
6
0
73
1.05
7101--7125
3
8.3
3
100
0
50
0
32
0
68
0.90
7672--7708
19
1.9
19
94
0
65
67
8
10
13
1.41
11547--11589
21
2.0
21
82
8
52
18
13
6
60
1.55
11947--11992
22
2.1
22
84
8
58
45
6
10
36
1.65
12875--12920
22
2.1
22
95
0
83
43
8
21
26
1.81
14319--14355
2
18.5
2
100
0
74
51
0
0
48
1.00
16625--16712
32
2.9
31
81
6
92
34
11
22
31
1.90
22023--22325
43
7.1
43
83
5
393
41
26
10
21
1.85
21999--22322
84
3.9
84
90
3
503
42
25
9
21
1.84
22435--22474
2
20.5
2
89
5
64
47
2
0
50
1.14
34209--34537
41
7.8
41
84
8
403
43
24
10
20
1.84
34209--34540
84
3.9
84
95
0
565
43
24
10
21
1.84
37735--38516
396
2.0
386
94
3
1359
30
18
21
29
1.97
45309--45354
22
2.1
22
84
8
58
45
6
10
36
1.65
46399--47043
320
2.0
318
96
1
1204
41
14
14
29
1.85
48233--48277
19
2.5
18
85
7
56
2
20
2
75
1.01
49712--49970
130
2.0
128
90
3
403
37
12
1
47
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49728--50018
130
2.3
128
84
8
369
38
12
2
47
1.52
49728--50055
128
2.5
128
82
7
373
37
11
2
48
1.52

Tables:   1

The End!