Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019995.1 Corchorus olitorius cultivar O-4 contig20028, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 879

Length: 1466
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:1404 original size:20 final size:21

Alignment explanation


    Indices: 1369--1407  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 21

       1359 TTTCCTTACT

                     *           
       1369 TTTCTTTTCTCTTTTCTTTTA
          1 TTTCTTTTCACTTTTCTTTTA

                               
       1390 TTTCTTTT-ACTTTTCTTT
          1 TTTCTTTTCACTTTTCTTT

       1408 AAAATTGGGC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    9  0.53
  21    8  0.47

ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77


Consensus pattern (21 bp):   
TTTCTTTTCACTTTTCTTTTA
Done.