Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019996.1 Corchorus olitorius cultivar O-4 contig20029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73632

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10514--10568
17
3.2
17
81
0
65
38
18
20
23
1.93
13729--13758
2
15.5
2
93
6
53
50
0
0
50
1.00
15887--15921
17
2.1
17
94
0
61
28
20
17
34
1.95
19507--19545
20
1.9
21
89
5
62
76
0
17
5
0.96
20480--20539
27
2.2
27
85
5
77
30
21
15
33
1.94
22363--22413
19
2.7
19
77
14
61
47
0
1
50
1.12
29479--29503
12
2.1
12
100
0
50
8
8
16
68
1.38
55220--55288
1
69.0
1
82
0
84
91
8
0
0
0.43
55222--55283
33
1.9
32
93
3
106
91
8
0
0
0.40
57976--58000
8
3.1
8
100
0
50
24
0
0
76
0.80
63351--63404
23
2.3
23
78
12
65
22
18
5
53
1.65
69947--70180
30
7.8
30
84
7
253
31
18
19
31
1.96
69945--70180
119
2.0
119
83
7
300
30
18
19
31
1.96
69945--70180
60
4.0
60
84
8
293
30
18
19
31
1.96
71913--72086
85
2.1
84
94
1
303
30
13
12
43
1.81

Tables:   1

The End!