Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019997.1 Corchorus olitorius cultivar O-4 contig20030, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37705

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
640--1123
167
2.9
166
83
5
588
30
14
15
39
1.87
2254--2696
107
4.1
107
92
3
689
42
8
8
39
1.67
10057--10082
13
2.0
13
100
0
52
38
0
0
61
0.96
15952--16147
98
2.0
98
93
2
340
39
5
10
44
1.62
27067--27120
23
2.4
22
79
11
56
44
14
3
37
1.63
26967--27156
22
8.5
22
76
3
137
38
15
8
37
1.78
28245--28276
16
2.0
16
100
0
64
43
25
6
25
1.77
32851--32944
45
2.2
44
90
7
149
40
21
3
35
1.69
33017--33604
295
2.0
292
92
1
971
43
17
15
23
1.87
37122--37260
72
1.9
72
94
0
242
24
27
15
33
1.95

Tables:   1

The End!