Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019999.1 Corchorus olitorius cultivar O-4 contig20032, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15433

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65--472
47
8.4
46
79
12
372
47
6
21
24
1.74
2--492
101
5.0
94
80
9
529
48
6
21
23
1.74
2--492
148
3.3
148
91
2
803
48
6
21
23
1.74
483--649
22
7.9
22
80
11
206
57
5
23
13
1.58
483--649
43
4.0
43
88
5
227
57
5
23
13
1.58
597--631
16
2.2
16
100
0
70
57
5
25
11
1.56
486--677
38
4.8
39
84
8
162
57
6
22
13
1.58
627--727
47
2.2
46
82
8
118
56
5
18
18
1.61
1899--1947
21
2.3
21
96
0
89
44
24
0
30
1.54
2157--2183
13
2.1
13
100
0
54
22
22
22
33
1.97
10094--10181
32
2.7
33
85
7
108
25
17
37
20
1.93
12296--12320
13
1.9
13
100
0
50
40
8
24
28
1.83
12321--12419
24
3.9
24
74
19
85
44
21
14
20
1.86
12338--12492
57
2.8
54
82
8
188
47
18
12
20
1.81
12338--12506
28
6.1
27
72
16
107
48
19
11
20
1.80

Tables:   1

The End!