Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002000.1 Corchorus olitorius cultivar O-4 contig02000, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 723

Length: 1206
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:435 original size:23 final size:20

Alignment explanation


    Indices: 390--431  Score: 84
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        380 ACTAAAGTCT

                                
        390 GAAGTGATGTTTGTAGTAGG
          1 GAAGTGATGTTTGTAGTAGG

                                
        410 GAAGTGATGTTTGTAGTAGG
          1 GAAGTGATGTTTGTAGTAGG

              
        430 GA
          1 GA

        432 GGAAAGTGCA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   22  1.00

ACGTcount: A:0.26, C:0.00, G:0.40, T:0.33


Consensus pattern (20 bp):   
GAAGTGATGTTTGTAGTAGG
Done.