Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020001.1 Corchorus olitorius cultivar O-4 contig20034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81283

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4481--4510
9
3.3
9
100
0
60
0
20
0
80
0.72
5635--5692
29
2.0
29
100
0
116
48
17
6
27
1.72
10204--10248
23
1.9
24
95
4
83
20
40
20
20
1.92
13135--13216
23
3.7
22
88
7
89
42
7
15
34
1.75
13144--13216
23
3.3
23
90
7
107
39
6
17
35
1.77
13251--13311
22
2.8
22
84
0
77
44
11
8
36
1.71
13369--13444
14
5.4
14
72
22
54
55
2
1
40
1.22
13404--13444
16
2.5
17
80
19
59
60
0
0
39
0.96
24657--25921
631
2.0
631
100
0
2530
21
27
22
28
1.99
27708--27764
25
2.4
24
88
5
80
31
5
3
59
1.36
28934--29046
57
2.0
57
87
3
165
30
26
18
24
1.98
35581--35618
13
2.9
13
84
7
51
50
23
10
15
1.75
35581--35614
13
2.5
14
90
4
52
44
26
11
17
1.83
46926--46956
14
2.2
14
100
0
62
29
9
32
29
1.89
50615--50655
18
2.4
17
77
22
57
26
9
4
58
1.50
50620--50655
18
1.9
19
94
5
65
30
11
2
55
1.49
53133--53216
41
2.0
41
100
0
168
44
23
9
22
1.82
54047--54146
50
2.0
49
98
1
191
28
14
13
45
1.81
55153--55190
20
2.0
19
90
10
60
21
34
15
28
1.94
63194--63227
5
6.8
5
93
0
59
2
17
0
79
0.86
78459--78497
15
2.7
15
84
4
53
2
17
0
79
0.84
80067--80134
3
22.3
3
91
8
111
33
0
1
64
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80049--80140
12
7.5
12
80
15
84
34
0
1
64
1.01

Tables:   1

The End!