Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020002.1 Corchorus olitorius cultivar O-4 contig20035, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121053

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3006--3037
15
2.1
15
94
0
55
46
6
9
37
1.61
4378--4413
19
1.9
18
88
5
54
41
2
22
33
1.68
9377--9473
21
4.6
21
69
8
72
11
23
50
14
1.75
9377--9473
42
2.3
42
81
10
110
11
23
50
14
1.75
10542--11252
355
2.0
355
97
0
1332
21
21
19
38
1.94
12708--12752
24
1.9
23
95
4
81
37
15
6
40
1.74
18553--18592
20
2.0
21
90
5
64
0
32
2
65
1.06
18553--18594
23
1.9
21
85
9
57
0
30
2
66
1.04
23483--23533
25
2.0
25
100
0
102
43
3
19
33
1.70
37230--37268
19
2.1
19
85
9
53
48
10
5
35
1.59
38898--38923
2
13.0
2
100
0
52
50
0
0
50
1.00
41001--41035
14
2.3
16
90
9
56
54
2
2
40
1.30
41528--41564
19
2.0
19
89
5
58
35
0
0
64
0.94
56387--56422
6
6.3
6
90
9
58
36
16
0
47
1.47
60364--60429
32
2.1
32
88
5
98
27
16
30
25
1.97
60858--60908
26
2.0
26
96
0
93
31
13
19
35
1.91
71389--71504
57
2.0
57
93
0
196
50
12
9
27
1.70
72306--72370
30
2.2
30
83
5
78
58
16
9
15
1.62
85603--85641
14
3.0
12
85
14
51
46
15
15
23
1.83
90107--90131
13
1.9
13
100
0
50
88
0
0
12
0.53
92455--92493
4
9.8
4
94
0
60
51
17
0
30
1.46
92463--92505
20
2.2
20
95
0
77
51
11
0
37
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92459--92497
12
3.2
12
88
0
60
51
15
0
33
1.44
92455--92501
16
2.9
16
93
0
76
51
14
0
34
1.43
92571--92605
16
2.2
16
94
0
61
51
8
0
40
1.33
92562--92610
8
6.1
8
87
0
53
48
10
0
40
1.37
92562--92610
12
4.1
12
89
0
71
48
10
0
40
1.37
92407--92619
108
2.0
108
95
3
380
42
11
4
41
1.61
92579--92610
2
16.0
2
93
0
55
50
3
0
46
1.17
93071--93127
28
2.0
28
83
6
71
36
15
10
36
1.82
101061--101392
173
1.9
173
87
3
490
43
8
11
36
1.72
101234--101742
142
3.7
138
77
13
552
44
10
11
33
1.73
101475--101721
128
1.9
128
85
4
338
45
12
10
31
1.76
101609--102091
167
2.9
167
91
2
765
45
10
9
34
1.72
101995--102314
175
1.8
175
91
0
532
45
10
10
33
1.73
105727--105767
22
1.9
21
85
5
55
21
29
29
19
1.98
113134--113167
17
2.0
17
88
0
50
23
50
26
0
1.50
114639--114685
24
2.0
24
95
0
85
44
0
2
53
1.12
114637--114695
16
3.4
16
83
11
64
45
1
1
50
1.21
114636--114686
2
27.5
2
77
15
56
47
0
1
50
1.12
114922--114993
31
2.3
31
75
17
78
26
5
8
59
1.48
119723--119756
13
2.5
14
90
4
52
0
11
0
88
0.52
120351--120392
17
2.5
17
88
0
57
26
45
19
9
1.80

Tables:   1

The End!