genome.fa.s20008.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020008.1 Corchorus olitorius cultivar O-4 contig20041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122034

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583--620	9	4.3	9	90	3	60	31	23	0	44	1.54
583--620	18	2.2	17	95	4	67	31	23	0	44	1.54
8579--8645	33	2.0	33	97	0	125	37	16	22	23	1.94
11236--11300	32	2.0	32	82	5	78	46	13	9	30	1.75
18652--18679	14	2.0	14	100	0	56	21	28	14	35	1.92
20319--20377	31	1.9	30	83	13	75	40	1	10	47	1.47
29569--29598	15	2.0	15	100	0	60	46	6	20	26	1.75
35228--35280	24	2.2	25	86	3	72	18	5	5	69	1.28
36166--36191	12	2.2	12	100	0	52	26	30	19	23	1.98
39140--39199	30	2.0	31	83	9	79	43	3	21	31	1.69
39441--39483	19	2.3	19	87	0	59	86	13	0	0	0.58
39458--39489	4	8.2	4	93	6	57	78	21	0	0	0.76
41926--42244	41	7.7	41	89	3	399	36	18	14	31	1.90
44803--44834	16	2.0	16	93	0	55	53	18	15	12	1.73
44934--45257	41	7.9	41	89	3	418	37	18	13	29	1.89
56028--56094	28	2.4	28	82	7	75	26	7	14	50	1.70
56866--56901	18	2.0	18	88	0	54	44	0	33	22	1.53
64003--64058	20	2.7	21	81	10	62	66	3	12	17	1.39
64017--64058	19	2.0	22	86	13	63	64	4	16	14	1.45
69232--69393	76	2.1	76	93	3	254	21	15	25	37	1.93
69502--69536	15	2.3	15	100	0	70	48	14	11	25	1.77
77254--77281	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80011--80045	17	2.1	17	94	0	61	40	14	0	45	1.45
90939--91107	52	3.3	51	78	8	137	45	24	7	22	1.78
90961--91121	52	3.1	51	79	6	164	40	24	8	26	1.84
92729--92757	1	29.0	1	100	0	58	0	0	0	100	0.00
91885--96075	740	5.7	739	79	6	4510	31	18	16	33	1.93
99318--99356	19	2.1	19	100	0	78	25	17	41	15	1.89
104359--104389	15	2.1	15	93	0	53	19	22	16	41	1.89
116418--116451	18	1.9	17	88	5	50	38	29	8	23	1.85
117022--117221	60	3.3	60	93	0	355	46	27	6	20	1.73
117195--117229	18	1.9	18	94	0	61	42	28	2	25	1.69
117541--117593	22	2.4	22	81	6	63	62	11	7	18	1.52
119178--119207	16	1.9	16	93	6	53	46	13	3	36	1.60
120126--120150	11	2.3	11	100	0	50	64	28	0	8	1.22

Tables:   1

The End!