Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020014.1 Corchorus olitorius cultivar O-4 contig20047, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9226

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
177--251
20
3.7
19
83
11
96
70
0
8
21
1.12
177--254
4
19.2
4
72
12
61
70
0
7
21
1.12
195--364
12
15.0
12
66
16
85
61
0
12
25
1.35
190--383
16
10.5
18
69
22
75
61
0
11
26
1.34
737--762
12
2.2
12
100
0
52
84
0
0
15
0.62
1745--2654
35
26.0
35
87
4
1208
39
19
14
27
1.89
2736--2783
22
2.2
22
85
7
62
12
33
6
47
1.66
3792--3871
37
2.1
39
83
6
101
36
12
13
37
1.83
4077--4117
16
2.6
16
88
3
57
4
19
0
75
0.98
4071--4117
5
9.2
5
86
4
67
4
19
0
76
0.95
7077--7151
20
3.7
19
83
11
96
70
0
8
21
1.12
7077--7154
4
19.2
4
72
12
61
70
0
7
21
1.12
7095--7264
12
15.0
12
66
16
85
61
0
12
25
1.35
7090--7283
16
10.5
18
69
22
75
61
0
11
26
1.34

Tables:   1

The End!