Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020015.1 Corchorus olitorius cultivar O-4 contig20048, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32449

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
831--887
30
1.9
29
89
10
89
21
14
5
59
1.54
1519--1554
18
2.0
18
88
0
54
47
5
11
36
1.63
2390--2426
19
2.0
18
89
5
56
40
2
21
35
1.68
13106--13154
21
2.3
22
82
6
57
20
32
20
26
1.97
14324--15114
40
18.9
40
74
12
472
36
19
25
18
1.94
14324--15059
87
8.9
79
79
10
388
36
20
25
17
1.94
14641--15114
87
5.4
87
88
2
682
36
19
26
17
1.94
14324--15114
174
4.7
173
83
5
816
36
19
25
18
1.94
18421--18459
17
2.4
16
83
8
60
30
5
46
17
1.70
27304--27366
30
2.1
30
84
0
81
26
19
28
25
1.98
27526--27562
18
2.1
18
89
0
56
51
16
13
18
1.76
28859--28929
31
2.4
30
85
4
90
32
22
18
26
1.97
30513--30561
21
2.4
20
86
3
62
30
0
2
67
1.02
31325--31351
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!