Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020016.1 Corchorus olitorius cultivar O-4 contig20049, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8634
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:139 original size:4 final size:4

Alignment explanation


    Indices: 130--172  Score: 77
    Period size: 4  Copynumber: 10.8  Consensus size: 4

        120 GAAAATGAAT

                                                         *       
        130 AATA AATA AATA AATA AATA AATA AATA AATA AATA TATA AAT
          1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AAT

        173 CGATACGAAT


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   4   37  1.00

ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28


Consensus pattern (4 bp):   
AATA

Done.