Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020017.1 Corchorus olitorius cultivar O-4 contig20050, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39168

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7834--7904
36
1.9
37
94
5
126
35
23
11
29
1.90
10487--10560
38
1.9
38
94
0
130
50
8
14
27
1.71
14168--14222
14
4.0
13
83
9
65
76
0
21
1
0.88
14169--14237
24
2.9
23
81
14
77
75
0
21
2
0.93
14168--14222
13
4.8
12
77
18
55
76
0
21
1
0.88
15880--16198
67
4.9
67
87
1
317
34
15
22
27
1.94
16043--16551
64
8.0
64
88
0
698
33
15
23
27
1.95
17821--17863
20
2.2
20
100
0
86
44
30
11
13
1.80
17927--17997
36
2.0
36
97
0
133
40
26
0
32
1.56
22330--22398
29
2.6
26
82
15
72
47
4
23
24
1.69
23459--23695
22
10.8
22
74
3
156
37
8
15
37
1.79
26914--26941
3
9.3
3
100
0
56
67
0
0
32
0.91
27585--27621
14
2.8
14
88
8
51
43
32
0
24
1.55
28119--28165
23
2.0
23
88
12
69
51
27
6
14
1.67
28201--28240
17
2.4
17
87
8
55
40
25
10
25
1.86
31534--31695
81
2.0
81
98
0
315
15
24
20
39
1.91
31969--32041
26
2.7
27
80
4
85
20
12
26
41
1.87
37158--37271
40
2.9
41
76
7
128
48
17
13
21
1.81
38432--38457
13
2.0
13
100
0
52
23
23
23
30
1.99

Tables:   1

The End!