Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020018.1 Corchorus olitorius cultivar O-4 contig20051, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29570

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
178--272
31
3.1
31
89
1
147
34
14
12
37
1.84
382--461
29
2.7
29
86
3
97
40
11
18
30
1.86
1468--1497
14
2.1
14
93
0
51
60
0
20
20
1.37
8527--8616
33
2.8
33
93
1
146
27
20
28
23
1.99
10770--10921
76
2.0
76
82
7
184
17
29
28
24
1.97
13153--13357
54
3.8
53
83
4
252
23
14
21
40
1.90
13135--13357
52
4.2
53
82
4
261
24
14
21
39
1.91
13135--13357
106
2.1
106
88
0
329
24
14
21
39
1.91
13348--13551
35
5.8
35
86
0
282
30
13
18
36
1.90
13348--13552
70
2.9
70
91
0
320
30
13
18
37
1.90
13516--14409
54
16.6
53
81
7
830
27
17
21
33
1.96
14972--15000
13
2.3
13
94
5
51
3
0
17
79
0.87
18036--18128
48
1.9
48
97
0
177
21
9
9
59
1.58
19615--19708
48
2.0
48
97
0
179
21
9
10
58
1.60
21657--21721
2
34.0
2
74
9
55
46
3
3
47
1.33
21673--21729
30
1.9
30
85
7
80
42
5
3
49
1.42
23778--25752
641
3.1
636
85
3
2565
26
19
17
36
1.94

Tables:   1

The End!