Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020020.1 Corchorus olitorius cultivar O-4 contig20053, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55695

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--48
2
22.5
2
100
0
90
0
51
0
48
1.00
990--1073
29
2.8
31
82
8
102
35
14
25
25
1.93
990--1075
31
2.8
31
84
6
106
34
13
24
26
1.93
2274--2409
73
1.9
73
88
0
209
28
19
17
33
1.95
13436--13489
4
13.5
4
92
0
81
46
1
3
48
1.30
13436--13489
6
9.0
6
91
0
81
46
1
3
48
1.30
13436--13489
10
5.4
10
93
0
81
46
1
3
48
1.30
23222--23296
24
3.5
24
64
27
67
48
21
4
26
1.68
23176--23310
40
3.4
41
84
5
170
44
19
7
28
1.77
23262--23308
24
2.0
24
86
0
67
48
19
6
25
1.72
25354--25500
52
2.8
51
77
3
143
43
23
8
24
1.81
32393--32553
31
5.3
31
85
3
184
32
25
25
16
1.96
49188--49267
40
2.0
40
95
0
142
35
18
6
40
1.76
49837--49912
38
2.0
38
94
0
134
27
32
17
22
1.96
50762--50826
32
2.1
31
88
2
94
47
10
4
36
1.59
52452--52612
78
2.1
78
94
2
279
33
14
1
50
1.50

Tables:   1

The End!