Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020022.1 Corchorus olitorius cultivar O-4 contig20055, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33480

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112--148
16
2.3
16
90
0
56
8
16
40
35
1.78
6441--6485
21
2.1
21
100
0
90
20
13
22
44
1.85
10378--10476
31
3.3
31
71
5
85
36
12
18
33
1.88
10828--10875
17
2.8
17
83
0
60
29
8
16
45
1.76
13716--13757
17
2.6
16
81
7
50
4
11
2
80
0.95
13798--13866
22
3.1
23
70
14
65
10
43
36
10
1.72
16100--16187
29
2.9
31
81
6
117
34
18
10
37
1.84
28081--28109
1
29.0
1
100
0
58
0
0
0
100
0.00
33435--33480
2
23.0
2
100
0
92
50
0
50
0
1.00

Tables:   1

The End!