Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020023.1 Corchorus olitorius cultivar O-4 contig20056, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134818

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
757--827
35
2.1
34
94
2
124
29
5
9
54
1.56
2427--2463
17
2.2
17
90
0
56
21
0
8
70
1.13
7143--7167
4
6.2
4
100
0
50
0
24
0
76
0.80
16862--16895
6
5.7
6
96
0
50
38
0
44
17
1.49
16862--16899
12
3.2
12
92
0
58
39
0
42
18
1.50
28441--28481
20
2.0
22
90
9
68
34
19
24
21
1.97
28442--28490
20
2.3
20
83
13
55
30
24
26
18
1.98
30256--30282
14
1.9
14
100
0
54
44
0
0
55
0.99
35856--35927
3
24.0
3
100
0
144
66
0
0
33
0.92
39157--39192
2
18.5
2
94
5
65
50
0
0
50
1.00
48877--48931
25
2.2
24
81
12
58
32
18
36
12
1.88
51877--52155
22
12.7
22
73
10
135
35
13
10
40
1.80
51877--52023
65
2.2
66
81
3
163
36
12
11
39
1.79
52091--52142
21
2.4
22
84
12
72
26
13
9
50
1.72
54759--54808
3
16.7
3
100
0
100
34
0
0
66
0.92
60040--60209
47
3.7
47
92
2
272
39
11
10
38
1.76
60651--60676
4
6.5
4
100
0
52
50
0
0
50
1.00
70254--70285
5
6.4
5
100
0
64
0
18
0
81
0.70
70296--70321
2
13.0
2
100
0
52
50
0
0
50
1.00
71353--71387
13
2.7
13
86
0
52
65
0
31
2
1.07
72268--72303
8
4.4
8
86
6
54
27
8
0
63
1.23
72245--72314
25
2.7
26
74
14
72
32
7
0
60
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73219--73300
22
3.8
22
78
9
80
39
8
15
36
1.78
79734--79794
22
2.8
22
87
0
77
42
9
11
36
1.74
79846--79910
31
2.2
30
91
5
105
43
6
9
41
1.61
81934--81978
18
2.8
16
86
10
56
8
11
0
80
0.92
82711--82753
20
2.2
20
83
8
52
69
9
9
11
1.36
87170--87273
22
4.8
22
75
5
104
39
14
11
34
1.82
87342--87401
22
2.8
22
79
2
68
25
18
10
46
1.79
92148--92182
13
2.7
13
86
0
52
20
42
8
28
1.81
93027--93055
12
2.5
12
94
5
51
41
17
0
41
1.49
93951--94001
22
2.2
24
83
16
72
41
0
0
58
0.98
93951--93999
25
2.0
25
84
8
64
40
0
0
59
0.98
94765--94817
25
2.1
26
82
10
65
43
0
0
56
0.99
94735--94812
22
3.5
22
75
20
72
41
2
1
55
1.22
104224--104267
16
2.8
15
83
16
54
2
18
2
77
0.98
104219--104273
11
5.4
10
76
18
51
1
20
1
76
0.97
104219--104263
19
2.4
19
85
7
56
2
17
2
77
0.97
104219--104267
16
3.2
14
81
16
53
2
18
2
77
0.96
107677--107704
14
2.0
14
100
0
56
50
21
7
21
1.72
107966--108033
29
2.3
30
82
9
86
35
20
10
33
1.87
108278--108321
2
22.0
2
100
0
88
50
0
0
50
1.00
121827--121966
74
1.9
74
84
0
190
39
19
10
30
1.86
122134--122192
31
1.9
31
92
0
100
25
13
1
59
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124403--124483
22
3.6
22
83
5
101
43
16
8
32
1.78
124511--124588
22
3.4
22
69
20
61
33
20
6
39
1.78
124523--124715
22
8.6
22
69
16
85
36
15
8
39
1.78
124559--124671
44
2.6
44
80
6
131
37
17
8
36
1.81
124657--124735
22
3.6
23
80
13
78
34
10
8
46
1.69
124807--124858
22
2.4
22
83
0
68
36
15
17
30
1.91
125408--125462
20
2.8
20
75
2
58
29
9
21
40
1.84
125458--125511
22
2.5
22
90
0
81
42
12
12
31
1.81
126097--126136
17
2.4
17
87
8
55
37
20
20
22
1.94
126535--126574
18
2.2
18
90
0
62
55
5
27
12
1.58
127010--127064
28
2.0
27
86
10
76
12
10
27
49
1.74
128602--128654
5
10.6
5
100
0
106
60
0
18
20
1.36
133330--133379
21
2.4
21
96
0
91
30
18
8
44
1.78

Tables:   1

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