genome.fa.s20024.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020024.1 Corchorus olitorius cultivar O-4 contig20057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98137

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305--356	17	3.4	17	70	25	60	48	11	30	9	1.72
300--357	29	2.0	29	100	0	116	48	10	31	10	1.71
727--913	93	2.0	93	94	2	331	40	17	11	31	1.84
1662--1706	14	3.1	14	83	3	54	40	13	0	46	1.43
3930--4181	121	2.0	126	84	8	327	50	1	9	37	1.46
9307--9347	19	2.2	19	100	0	82	53	0	4	41	1.22
9307--9353	19	2.5	19	93	3	69	53	0	6	40	1.27
10249--10285	16	2.2	17	90	4	58	45	0	16	37	1.47
11864--11935	33	2.2	33	100	0	144	6	38	33	20	1.80
14250--14339	31	2.9	30	79	8	92	33	13	24	28	1.93
14244--14351	29	3.6	30	75	16	89	33	13	25	27	1.94
14649--14703	24	2.3	25	78	15	62	25	21	23	29	1.99
20708--20780	34	2.1	34	92	0	119	19	15	30	35	1.92
28374--28440	30	2.2	30	81	5	82	40	20	10	28	1.86
30646--30745	27	3.7	27	89	1	137	36	27	18	19	1.94
31381--31454	28	2.7	27	80	2	67	24	16	21	37	1.93
33173--33200	1	28.0	1	100	0	56	100	0	0	0	0.00
39454--39538	34	2.5	34	98	0	161	40	28	12	18	1.88
43139--43192	26	2.1	26	82	6	65	16	18	22	42	1.89
45191--45219	2	14.5	2	100	0	58	48	0	0	51	1.00
46122--46352	51	4.5	51	95	0	392	40	3	16	40	1.64
47354--47835	47	10.7	47	84	10	614	18	28	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47352--47790	87	5.0	87	94	1	716	17	28	18	34	1.94
49391--49478	45	2.0	43	89	6	133	38	22	4	34	1.75
60859--60942	27	3.1	26	80	13	82	17	23	19	39	1.92
65962--65997	19	1.9	18	88	5	54	27	16	5	50	1.68
69444--70214	47	16.2	48	82	10	567	46	6	20	26	1.74
69460--70209	94	7.9	94	85	4	857	46	6	20	27	1.74
69462--70225	141	5.4	140	83	4	816	46	6	20	26	1.74
71478--71507	15	1.9	16	93	6	53	23	6	16	53	1.66
77454--77555	51	2.0	51	83	7	127	21	18	13	46	1.84
83808--83908	46	2.2	46	98	1	195	20	18	12	47	1.82
84257--84466	42	5.0	42	100	0	420	35	9	14	40	1.78
85160--85216	22	2.6	22	85	0	69	40	24	24	10	1.87
85781--86023	119	2.0	119	100	0	486	28	21	10	38	1.87
86213--86293	42	1.9	42	94	0	144	30	7	14	46	1.72
87022--87063	22	1.9	22	100	0	84	47	9	14	28	1.75
87020--87328	156	2.0	157	95	0	557	45	15	10	27	1.79
90870--90954	44	1.9	44	95	0	152	27	36	14	22	1.92
91561--91639	31	2.6	30	80	7	90	30	30	12	26	1.93
92743--92788	17	2.8	16	83	9	56	41	8	43	6	1.61
92776--92835	31	2.0	30	83	9	77	71	0	23	5	1.05
93450--93652	34	5.7	33	80	11	192	39	16	14	29	1.88
94262--94419	61	2.5	60	81	12	178	50	24	10	15	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95923--95947	2	12.5	2	100	0	50	48	0	0	52	1.00
97118--97159	15	2.7	15	92	3	66	64	14	7	14	1.48

Tables:   1

The End!