Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020027.1 Corchorus olitorius cultivar O-4 contig20060, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62566

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9547--9788
22
11.0
22
70
11
122
32
16
9
41
1.80
9606--9867
22
11.7
22
70
19
109
37
14
9
39
1.78
9513--10195
44
15.6
44
67
15
152
35
17
8
37
1.81
9809--9955
22
6.7
22
75
6
82
38
17
8
35
1.81
9809--9955
66
2.2
66
77
9
156
38
17
8
35
1.81
9978--10195
66
3.3
66
81
5
233
38
18
8
34
1.81
9960--10192
22
10.5
22
75
10
172
38
17
8
36
1.79
26030--26062
10
3.4
10
95
4
59
39
27
0
33
1.57
32873--32920
19
2.5
20
80
12
57
52
2
0
45
1.12
40205--40249
21
2.1
21
100
0
90
42
24
6
26
1.79
40919--40966
19
2.5
20
80
12
57
52
2
0
45
1.12
46385--46417
14
2.3
15
89
5
50
57
24
9
9
1.58
46553--46584
16
2.0
16
93
0
55
78
18
3
0
0.89
53176--53220
22
2.2
20
84
8
54
55
0
37
6
1.26
54814--54842
9
3.2
9
100
0
58
0
41
10
48
1.37
60984--61082
49
2.0
49
98
0
189
42
18
9
30
1.81

Tables:   1

The End!