Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020029.1 Corchorus olitorius cultivar O-4 contig20062, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42623

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
416--446
15
2.1
15
93
0
53
32
6
9
51
1.60
358--604
123
2.0
124
98
0
478
30
17
10
42
1.82
539--569
15
2.1
15
93
0
53
32
6
9
51
1.60
771--804
6
5.7
6
96
0
59
47
0
14
38
1.45
3780--3863
36
2.3
36
95
0
150
48
16
4
29
1.67
5349--5383
2
17.5
2
100
0
70
51
0
0
48
1.00
15874--15909
19
1.9
18
88
5
54
27
22
8
41
1.82
20749--20812
30
2.1
30
85
5
85
12
12
10
64
1.51
20846--20883
19
2.0
19
94
0
67
21
0
13
65
1.26
22800--22826
2
13.5
2
100
0
54
51
0
0
48
1.00
26719--26755
17
2.2
17
100
0
74
27
32
16
24
1.96
37079--37226
38
3.9
38
91
1
226
24
18
34
22
1.96
37256--37281
6
4.3
6
100
0
52
15
0
34
50
1.45
41809--41839
16
1.9
16
93
0
53
38
9
6
45
1.63
41848--42623
202
3.9
198
86
3
1047
33
19
13
34
1.90

Tables:   1

The End!