Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020030.1 Corchorus olitorius cultivar O-4 contig20063, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47885

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3996--4059
27
2.4
27
97
0
119
29
12
23
34
1.92
5281--5333
11
5.2
10
78
17
56
39
1
18
39
1.62
5280--5333
19
2.6
21
77
19
60
38
1
18
40
1.61
12728--12825
22
4.5
22
81
8
103
37
15
26
20
1.92
14020--14053
9
3.9
9
88
7
52
0
0
88
11
0.52
21098--21127
14
2.1
15
93
6
53
36
3
0
60
1.14
25128--25537
201
2.0
200
94
3
723
44
8
11
36
1.70
25650--25730
39
2.0
40
92
2
137
37
3
8
50
1.51
27448--27503
29
1.9
29
81
0
67
44
12
12
30
1.79
36743--36801
21
3.0
19
85
5
73
32
18
11
37
1.87
43471--43513
21
2.0
21
100
0
86
13
9
30
46
1.75
47385--47413
14
2.1
14
100
0
58
65
6
6
20
1.40

Tables:   1

The End!