Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020031.1 Corchorus olitorius cultivar O-4 contig20064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41433

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23--71
21
2.3
20
75
10
53
14
6
2
77
1.05
4562--4609
15
3.3
14
85
8
69
0
20
2
77
0.88
4552--4620
36
2.0
32
86
10
93
1
23
1
73
0.99
4543--4618
18
4.2
18
70
12
66
1
19
2
76
0.98
10731--10938
106
2.0
106
85
1
283
46
10
16
27
1.79
10903--10968
32
2.1
32
91
0
105
56
12
12
19
1.67
14132--14935
125
6.5
125
83
2
812
33
16
15
34
1.90
17795--17819
13
1.9
13
100
0
50
88
0
12
0
0.53
19805--19838
2
17.0
2
100
0
68
50
0
0
50
1.00
20295--20320
2
13.0
2
100
0
52
50
0
0
50
1.00
24934--26544
428
3.8
425
83
4
1859
39
14
17
28
1.89
24871--26544
215
7.8
214
85
3
1829
39
15
17
28
1.89
37862--37918
29
2.0
29
82
0
69
29
1
5
63
1.27
38118--38180
3
21.3
3
90
9
103
34
0
0
65
0.93
39338--39384
10
4.7
10
79
10
60
36
0
23
40
1.55
39351--39491
69
2.0
70
97
1
266
26
9
16
47
1.77
40477--40519
2
21.5
2
90
0
68
51
4
0
44
1.22

Tables:   1

The End!