Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020032.1 Corchorus olitorius cultivar O-4 contig20065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29269

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5749--5793
22
2.0
22
100
0
90
53
28
13
4
1.59
5934--5967
12
2.8
12
95
0
59
44
11
0
44
1.40
8768--8826
31
1.9
31
89
3
93
45
13
13
27
1.81
9247--9607
180
2.0
179
93
0
614
36
10
2
50
1.51
9857--9927
30
2.4
28
86
6
97
26
16
15
40
1.89
10681--10722
14
3.0
14
93
6
68
54
2
0
42
1.13
11225--11271
21
2.2
22
84
3
60
14
8
8
68
1.39
11566--11607
10
4.3
10
78
3
50
38
33
21
7
1.81
12167--12236
34
2.0
36
88
5
108
67
11
2
18
1.34
13790--13828
20
2.0
19
95
5
69
46
12
20
20
1.83
15876--15956
30
2.5
34
76
17
100
45
4
1
48
1.32
15898--15963
30
2.2
29
81
10
71
51
4
0
43
1.22
16013--16076
11
5.9
10
84
10
65
53
21
12
12
1.71
16008--16072
34
1.9
33
84
9
87
52
20
12
15
1.74
19518--19589
31
2.4
30
83
2
81
40
31
11
16
1.84
19519--19608
30
3.0
30
81
4
83
43
28
10
17
1.82

Tables:   1

The End!