Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020034.1 Corchorus olitorius cultivar O-4 contig20067, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75901

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4797--4827
15
2.1
15
100
0
62
61
12
6
19
1.53
4855--4889
14
2.5
14
90
0
61
68
0
8
22
1.16
7768--7795
4
7.0
4
100
0
56
75
0
0
25
0.81
10394--10446
26
2.0
26
100
0
106
15
30
32
22
1.94
11265--11294
14
2.1
14
100
0
60
66
6
13
13
1.43
20618--20726
56
1.9
56
100
0
218
31
20
10
38
1.85
28396--28425
2
15.0
2
100
0
60
50
0
0
50
1.00
37498--42630
331
15.4
330
76
8
3730
33
14
15
36
1.87
38861--42630
333
11.3
330
77
9
2511
33
13
15
37
1.87
39629--39655
2
13.5
2
100
0
54
48
0
0
51
1.00
40655--40679
2
12.5
2
100
0
50
48
0
0
52
1.00
44627--44670
21
2.1
21
83
8
54
47
6
4
40
1.50
45128--45181
22
2.6
21
82
11
58
38
0
9
51
1.34
45200--45246
21
2.2
21
88
0
67
48
2
2
46
1.25
47240--47296
30
1.9
30
96
0
105
7
31
3
57
1.42
47619--47805
95
2.0
95
94
0
329
18
5
25
50
1.69
47659--47807
49
3.1
49
64
22
125
18
6
27
48
1.71
50966--51003
15
2.5
15
95
0
67
5
26
39
28
1.78
51854--51886
2
16.5
2
100
0
66
48
0
0
51
1.00
58255--58325
18
4.2
17
74
20
69
74
4
0
21
0.98
58265--58311
10
4.6
10
75
15
51
74
2
0
23
0.93
58251--58311
31
2.0
31
100
0
122
75
3
0
21
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58275--58316
21
2.0
22
90
4
68
78
2
0
19
0.86
58252--58318
31
2.2
31
94
0
116
79
2
0
17
0.86
66914--66964
21
2.4
21
83
0
66
15
3
25
54
1.58
68956--69015
25
2.4
25
85
2
75
68
8
0
23
1.16
69421--69446
13
2.0
13
100
0
52
7
53
0
38
1.30
75797--75835
12
3.4
12
79
13
55
66
5
10
17
1.39
75791--75849
22
2.8
21
82
7
75
72
3
10
13
1.22

Tables:   1

The End!