Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020035.1 Corchorus olitorius cultivar O-4 contig20068, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38652

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7137--7193
30
1.9
30
92
7
98
50
17
15
15
1.78
7380--7404
1
25.0
1
100
0
50
0
0
0
100
0.00
8248--8275
2
14.0
2
100
0
56
50
0
0
50
1.00
10510--10603
45
2.2
43
83
7
120
39
21
4
35
1.73
12012--12038
14
1.9
14
100
0
54
44
18
14
22
1.86
16129--16155
14
1.9
14
100
0
54
44
18
14
22
1.86
17315--17340
2
13.0
2
100
0
52
50
0
0
50
1.00
17456--17511
22
2.7
21
76
17
64
35
8
8
46
1.67
17464--17537
20
3.7
20
76
18
73
32
13
13
40
1.84
17573--17644
10
7.1
10
72
12
58
30
9
13
45
1.76
17567--17729
20
8.0
20
67
13
91
32
10
11
45
1.75
17439--17741
109
2.8
107
86
6
402
31
14
11
42
1.81
17674--17740
20
3.2
20
77
8
71
32
10
11
44
1.75
18076--18127
26
2.0
25
82
10
61
19
28
7
44
1.78
18367--18396
15
2.0
15
100
0
60
26
6
20
46
1.75
18939--18998
31
1.9
32
82
3
77
61
25
8
5
1.44
19920--20164
126
2.0
120
92
4
400
35
17
7
38
1.79
20848--21086
90
2.6
91
89
3
354
37
13
9
39
1.77
21615--21680
32
2.1
32
97
0
123
63
3
3
30
1.24
21713--21817
52
2.0
52
100
0
210
50
5
9
34
1.59
29764--29834
26
2.9
24
85
10
83
59
18
11
11
1.61
30222--30252
16
1.9
16
93
0
53
45
3
19
32
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31961--32035
35
2.2
35
88
4
109
16
37
40
6
1.74
32620--32688
28
2.5
28
77
15
72
28
20
11
39
1.87
35417--35499
22
3.8
21
73
17
64
57
1
2
38
1.19
35419--35467
25
2.0
25
84
8
64
59
0
0
40
0.98

Tables:   1

The End!