Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020036.1 Corchorus olitorius cultivar O-4 contig20069, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2867
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38


Found at i:14 original size:2 final size:2

Alignment explanation


    Indices: 8--45  Score: 76
    Period size: 2  Copynumber: 19.0  Consensus size: 2

          1 TACATAG

                                                                    
          8 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

         46 CTAGTAAATA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:1610 original size:58 final size:58

Alignment explanation


    Indices: 1514--1623  Score: 159
    Period size: 58  Copynumber: 1.9  Consensus size: 58

       1504 ATTAATCAAA

                                                     *    *           
       1514 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACGTTTTCGGACCAAAACT
          1 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACATTTTAGGACCAAAACT

                *            *            *                      
       1572 TATCGAGTGACATGTTTTTTTATTAGATGCCT-AAAAAAGACATTTTAGGACC
          1 TATCAAGTGACATG-TTCTTTATTAGATGCATAAAAAAAGACATTTTAGGACC

       1624 GAGGCATGAT


Statistics
Matches: 46,  Mismatches: 5, Indels: 2
        0.87            0.09        0.04

Matches are distributed among these distances:
  58   31  0.67
  59   15  0.33

ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34


Consensus pattern (58 bp):   
TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACATTTTAGGACCAAAACT
Done.