Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020037.1 Corchorus olitorius cultivar O-4 contig20070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68309

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2085--2263
93
1.9
93
91
0
295
50
2
13
33
1.55
2271--2333
31
2.0
31
100
0
126
41
6
22
30
1.78
2620--2644
1
25.0
1
100
0
50
100
0
0
0
0.00
7347--7388
22
1.9
22
90
0
66
40
26
19
14
1.89
9754--9789
18
2.0
18
100
0
72
11
33
22
33
1.89
10851--10912
31
2.0
31
90
0
97
46
6
17
29
1.73
17630--17706
30
2.6
30
75
2
75
16
18
12
51
1.75
24354--24412
3
19.3
3
92
3
100
64
0
1
33
1.04
28195--28242
16
2.8
18
75
15
57
45
2
2
50
1.25
31128--31214
45
1.9
45
95
0
156
34
4
21
39
1.74
45892--45918
7
3.9
7
100
0
54
11
0
0
88
0.50
45903--45956
22
2.4
23
82
17
69
22
1
7
68
1.24
47026--48011
429
2.3
420
80
7
1043
32
15
12
39
1.84
47026--48034
432
2.3
423
79
7
1068
32
15
12
39
1.85
54322--54369
24
2.0
24
100
0
96
33
8
12
45
1.72
57657--57682
11
2.4
11
100
0
52
69
7
15
7
1.35
63407--63464
29
2.0
28
83
9
73
50
8
6
34
1.60

Tables:   1

The End!