Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020038.1 Corchorus olitorius cultivar O-4 contig20071, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4738
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24


Found at i:437 original size:51 final size:52

Alignment explanation


    Indices: 336--437  Score: 120
    Period size: 51  Copynumber: 2.0  Consensus size: 52

        326 GTTCATCAAA

                                                     * **       
        336 TTCTCCTTGTTTAGATCTTGTCTCAGGACAAACAAACACTCTTTTAATGTTT
          1 TTCTCCTTGTTTAGATCTTGTCTCAGGACAAACAAACACTCGTACAATGTTT

                                     *     *                     
        388 TTCT-CTTGTTTCA-ATCTTGTCTCCGGACATACAAACACT-GTACACATGTT
          1 TTCTCCTTGTTT-AGATCTTGTCTCAGGACAAACAAACACTCGTACA-ATGTT

        438 CTTCATTCAG


Statistics
Matches: 43,  Mismatches: 5, Indels: 5
        0.81            0.09        0.09

Matches are distributed among these distances:
  50    2  0.05
  51   36  0.84
  52    5  0.12

ACGTcount: A:0.25, C:0.24, G:0.12, T:0.40


Consensus pattern (52 bp):   
TTCTCCTTGTTTAGATCTTGTCTCAGGACAAACAAACACTCGTACAATGTTT
Done.