Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020039.1 Corchorus olitorius cultivar O-4 contig20072, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66652

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2389--2414
13
2.0
13
100
0
52
38
23
23
15
1.92
7889--7959
29
2.3
32
92
7
121
60
1
0
38
1.06
10542--10572
16
1.9
16
93
0
53
41
35
16
6
1.74
11280--11326
22
2.1
22
84
7
60
61
2
12
23
1.42
11204--11386
93
2.0
93
88
5
273
50
2
13
33
1.55
11398--11459
31
2.0
31
87
6
90
45
3
19
32
1.66
12550--12589
18
2.2
18
86
0
53
60
0
0
40
0.97
12570--12604
14
2.5
14
90
0
52
57
0
0
42
0.99
15248--15284
19
2.0
18
89
5
56
40
2
21
35
1.68
19121--19164
16
3.0
14
87
12
54
11
9
18
61
1.55
19886--19920
18
1.9
18
88
0
52
45
5
11
37
1.64
20781--20810
11
2.7
11
100
0
60
43
0
20
36
1.52
22615--22665
6
8.5
6
95
0
93
82
15
0
1
0.76
26969--27222
53
4.8
52
96
0
427
37
19
14
28
1.92
27030--27170
28
5.3
28
60
14
82
35
19
15
29
1.93
26969--27222
105
2.4
105
93
1
429
37
19
14
28
1.92
37124--37161
19
2.0
20
89
5
60
31
0
18
50
1.47
37551--37597
19
2.5
19
96
0
85
27
23
27
21
1.99
38192--38229
11
3.5
11
89
10
51
39
0
2
57
1.12
39136--39203
21
3.2
21
64
15
59
51
16
4
27
1.63
39257--39372
56
2.1
56
93
0
196
41
2
22
33
1.68
43930--43965
14
2.7
13
87
8
54
55
0
2
41
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44561--44615
18
3.1
19
80
19
57
58
0
16
25
1.38
44958--44990
2
16.5
2
100
0
66
51
0
0
48
1.00
48082--48113
3
10.7
3
100
0
64
0
31
0
68
0.90
48680--48741
30
2.0
31
90
6
99
37
11
17
33
1.86
53542--53577
9
4.1
9
92
3
56
44
2
8
44
1.48
55025--55121
39
2.6
39
79
11
112
22
36
15
25
1.94
55279--55330
18
3.1
17
81
13
63
59
9
0
30
1.29
55662--55747
23
3.4
24
75
16
93
46
0
29
24
1.53
56037--56066
14
2.1
14
93
0
51
43
13
23
20
1.86
57518--57580
2
35.5
2
71
23
52
53
0
1
44
1.10
57518--57579
21
2.9
21
77
22
67
53
0
1
45
1.10
57534--57580
19
2.5
19
89
3
78
53
0
2
44
1.12
60928--60960
16
2.1
16
94
0
57
39
6
15
39
1.72
61909--62196
43
6.8
43
83
3
359
40
26
10
22
1.86
61909--62196
84
3.4
85
87
4
386
40
26
10
22
1.86
61909--62196
127
2.3
127
91
0
459
40
26
10
22
1.86

Tables:   1

The End!