Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020042.1 Corchorus olitorius cultivar O-4 contig20075, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55597

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1890--1925
19
1.9
18
88
5
54
27
22
8
41
1.82
4302--4391
2
47.5
2
73
18
68
50
2
0
47
1.13
4302--4387
18
4.7
19
76
16
76
50
2
0
47
1.14
12258--12386
44
2.8
46
94
4
235
27
11
18
42
1.85
22039--22272
119
2.0
118
93
0
396
29
19
22
29
1.98
26121--26254
66
2.0
66
85
7
180
29
18
13
38
1.89
30214--30427
106
2.0
106
100
0
428
35
11
14
39
1.82
30536--30560
12
2.1
12
100
0
50
32
36
0
32
1.58
34496--34528
1
33.0
1
100
0
66
0
0
0
100
0.00
37030--37092
31
2.1
31
93
3
110
28
11
4
55
1.55
39327--39401
32
2.4
32
86
6
100
30
9
20
40
1.84
43106--43328
54
4.1
53
74
7
189
32
20
17
30
1.95
43300--43900
35
16.9
35
87
3
808
41
19
13
26
1.88
43300--43900
209
2.8
209
89
3
842
41
19
13
26
1.88
43869--44056
54
3.5
54
86
3
245
31
20
17
29
1.96
45184--45265
38
2.1
39
81
2
94
26
9
14
48
1.75
48791--48818
5
5.6
5
100
0
56
57
0
0
42
0.99
50884--50929
24
1.9
24
86
0
65
30
15
15
39
1.88
50968--51003
13
2.7
13
91
4
54
33
0
19
47
1.50
54931--55005
22
3.4
22
79
3
89
36
10
10
42
1.74
55005--55111
23
4.9
22
82
5
110
35
14
7
42
1.75

Tables:   1

The End!