Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020048.1 Corchorus olitorius cultivar O-4 contig20081, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87323

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6434--6535
33
3.1
33
87
1
134
26
30
17
25
1.97
25357--25433
16
4.9
16
70
12
52
11
15
35
37
1.84
27616--27649
1
34.0
1
100
0
68
100
0
0
0
0.00
28730--28812
12
7.2
13
67
29
62
43
1
1
54
1.16
35702--35806
53
2.0
53
92
0
174
46
14
6
32
1.70
39495--39558
33
1.9
34
93
3
112
46
9
7
35
1.65
40800--40874
31
2.5
31
86
2
107
34
18
14
32
1.91
43551--43597
10
4.6
10
84
5
58
34
0
8
57
1.29
43497--43578
31
2.6
31
75
5
76
28
2
9
59
1.42
43552--43597
21
2.2
20
84
3
56
34
0
8
56
1.30
43551--43607
10
5.7
10
83
6
53
36
0
7
56
1.27
43835--43882
17
2.8
17
84
9
62
39
0
4
56
1.19
47297--47359
31
2.0
31
90
0
99
34
31
12
20
1.90
58643--58725
38
2.2
38
86
0
112
25
24
19
31
1.98
61491--61552
32
1.9
32
96
0
115
59
14
3
22
1.49
72903--72962
31
1.9
32
89
3
95
26
15
25
33
1.95
72975--72999
13
1.9
13
100
0
50
20
16
16
48
1.82
73076--73138
31
2.0
32
87
9
94
14
20
12
52
1.74
73215--73244
10
2.8
11
90
10
53
20
0
16
63
1.31
74914--74943
15
2.1
14
93
6
51
43
3
0
53
1.17
77510--77542
16
2.1
16
100
0
66
18
24
6
51
1.68

Tables:   1

The End!