Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020050.1 Corchorus olitorius cultivar O-4 contig20083, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53541

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6851--6945
46
2.2
44
83
9
115
37
22
4
35
1.73
7238--7292
13
4.3
13
77
13
69
54
16
7
21
1.66
8470--8568
32
3.1
32
85
0
135
50
7
13
29
1.67
8494--8541
15
2.9
17
71
22
57
47
10
10
31
1.71
8483--8534
15
3.3
15
73
19
52
48
9
15
26
1.76
8498--8706
83
2.5
84
87
3
296
49
7
14
28
1.69
8409--8651
115
2.1
116
83
2
310
48
6
14
30
1.68
8583--8651
33
2.2
31
84
5
84
55
2
14
27
1.54
8684--8720
19
1.9
19
94
0
65
48
8
16
27
1.74
8515--8763
83
3.0
83
84
4
277
46
7
16
29
1.74
10031--10128
49
2.0
49
97
0
187
47
14
17
20
1.82
11627--11794
78
2.2
77
92
3
275
35
11
0
52
1.42
12336--12368
17
1.9
17
88
11
50
60
0
0
39
0.97
12515--12543
15
1.9
15
100
0
58
41
6
0
51
1.28
31505--31551
16
3.1
16
69
12
53
31
2
10
55
1.46
39678--39726
25
2.0
25
100
0
98
24
10
8
57
1.59
44419--44495
5
15.4
5
80
12
79
0
0
14
85
0.59
44422--44498
1
77.0
1
73
0
64
0
0
12
87
0.56
44422--44498
25
3.2
24
87
8
111
0
0
12
87
0.56
44422--44498
39
2.0
37
90
9
120
0
0
12
87
0.56
45214--45288
29
2.5
29
82
4
87
32
17
10
40
1.84
45390--45455
31
2.1
31
88
5
98
42
12
13
31
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45857--46214
177
2.0
179
89
3
553
34
9
3
52
1.50
46466--46557
31
3.1
29
89
7
132
33
14
8
43
1.76
51213--51248
19
1.9
18
88
5
54
27
22
8
41
1.82
52763--52962
102
2.0
99
87
3
285
41
10
9
39
1.71

Tables:   1

The End!