Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020051.1 Corchorus olitorius cultivar O-4 contig20084, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22267

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2517--2619
43
2.4
44
85
1
127
38
8
10
41
1.71
2495--2619
22
5.7
22
77
3
119
37
8
11
43
1.70
2495--2620
65
1.9
65
80
3
146
38
7
11
42
1.70
3198--3283
36
2.4
36
84
1
120
17
25
20
36
1.95
3394--3662
118
2.3
118
84
0
358
14
30
24
30
1.95
3665--4129
181
2.6
181
88
1
646
12
32
25
28
1.93
4146--4223
29
2.7
29
91
0
138
6
33
29
30
1.83
4204--4260
25
2.3
25
87
6
80
10
33
28
28
1.90
4505--4723
112
2.0
110
89
1
339
13
27
30
28
1.94
7456--7493
11
3.5
11
89
10
51
39
0
2
57
1.12
7811--7852
6
6.8
6
94
2
66
52
11
0
35
1.38
9922--9952
12
2.6
12
94
0
53
38
0
6
54
1.26
11175--11235
21
3.0
20
86
6
88
32
19
11
36
1.88
11768--11797
2
15.0
2
100
0
60
50
0
0
50
1.00
15849--16015
31
5.4
31
83
0
190
31
23
24
20
1.98
18279--18346
22
3.0
22
95
2
118
54
4
20
20
1.62
20408--21073
35
18.7
35
85
5
827
42
18
12
26
1.85
21048--21384
161
2.1
163
84
4
432
30
23
18
27
1.97
21047--21397
54
6.5
54
78
5
352
31
23
17
27
1.97
21093--21432
108
3.2
106
78
8
323
31
22
17
27
1.97
21372--21569
106
1.9
107
88
4
301
37
22
13
26
1.91
21372--21569
54
3.7
53
87
4
272
37
22
13
26
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21493--21683
92
2.1
93
84
4
253
36
20
18
25
1.95

Tables:   1

The End!