Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020052.1 Corchorus olitorius cultivar O-4 contig20085, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3398
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31


Found at i:492 original size:14 final size:13

Alignment explanation


    Indices: 457--504  Score: 53
    Period size: 14  Copynumber: 3.5  Consensus size: 13

        447 AAAACCGATT

                       * 
        457 TTTTTGAAAACCC
          1 TTTTTGAAAACAC

                          
        470 TTTTCTGAAAACAC
          1 TTTT-TGAAAACAC

                           
        484 TTTCTTGAAAAGCA-
          1 TTT-TTGAAAA-CAC

                   
        498 TTTTTGA
          1 TTTTTGA

        505 CTTTTGAAAA


Statistics
Matches: 31,  Mismatches: 1, Indels: 6
        0.82            0.03        0.16

Matches are distributed among these distances:
  13    8  0.26
  14   20  0.65
  15    3  0.10

ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42


Consensus pattern (13 bp):   
TTTTTGAAAACAC
Done.