Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020053.1 Corchorus olitorius cultivar O-4 contig20086, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21519

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3305--3329
5
5.0
5
100
0
50
60
0
0
40
0.97
5488--5515
14
2.0
14
100
0
56
50
7
14
28
1.69
7062--7102
19
2.2
19
100
0
82
26
24
14
34
1.94
9016--9048
17
1.9
17
88
11
50
39
0
0
60
0.97
10037--10079
22
2.0
22
90
4
70
65
0
9
25
1.22
9973--10140
92
1.8
93
85
3
241
53
2
10
33
1.48
10176--10237
31
2.0
31
87
0
88
41
3
24
30
1.70
12616--12645
11
2.7
11
94
0
51
43
10
33
13
1.77
15821--15856
19
1.9
18
88
5
54
41
8
22
27
1.82
16665--16714
25
2.0
25
84
0
64
42
10
2
46
1.49
19862--19899
14
2.5
16
83
12
53
65
13
7
13
1.46

Tables:   1

The End!