Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020054.1 Corchorus olitorius cultivar O-4 contig20087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10203

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
576--636
29
2.1
29
93
0
104
36
14
18
31
1.91
705--777
33
2.2
33
92
2
121
46
2
30
20
1.65
953--998
22
2.0
23
91
4
76
54
6
21
17
1.65
1095--1136
21
2.0
21
90
9
68
50
19
9
21
1.75
1230--1262
15
2.2
15
100
0
66
42
15
6
36
1.71
1591--1654
2
35.5
2
71
25
54
42
1
1
54
1.19
1591--1656
5
12.4
5
86
13
80
42
1
1
54
1.18
3947--3988
22
1.9
22
100
0
84
42
26
7
23
1.80
8401--8456
23
2.5
22
75
16
60
25
3
0
71
1.02
8408--8455
22
2.2
23
85
7
64
22
4
0
72
1.01

Tables:   1

The End!