Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020055.1 Corchorus olitorius cultivar O-4 contig20088, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7330
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:5858 original size:11 final size:11

Alignment explanation


    Indices: 5842--5866  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       5832 GGGGAATAAT

                       
       5842 CAATCCAAAAA
          1 CAATCCAAAAA

                       
       5853 CAATCCAAAAA
          1 CAATCCAAAAA

               
       5864 CAA
          1 CAA

       5867 ACAATTTTCT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.64, C:0.28, G:0.00, T:0.08


Consensus pattern (11 bp):   
CAATCCAAAAA
Done.