Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020066.1 Corchorus olitorius cultivar O-4 contig20099, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9044
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31


Found at i:4278 original size:21 final size:21

Alignment explanation


    Indices: 4239--4292  Score: 65
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       4229 CCCTCACTCG

                     *     *     
       4239 GCCACA-GCACGGCCGTCCGA
          1 GCCACATGCCCGGCCATCCGA

                                *
       4259 GCCACATGCCCGGCCATCCGC
          1 GCCACATGCCCGGCCATCCGA

                 *       
       4280 GCCACCTGCCCGG
          1 GCCACATGCCCGG

       4293 TCAAGCTCGC


Statistics
Matches: 29,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  20    6  0.21
  21   23  0.79

ACGTcount: A:0.15, C:0.50, G:0.28, T:0.07


Consensus pattern (21 bp):   
GCCACATGCCCGGCCATCCGA
Done.