Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020075.1 Corchorus olitorius cultivar O-4 contig20108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20994

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
424--493
36
1.9
36
91
0
113
21
10
8
60
1.55
3932--3973
21
2.0
21
86
9
59
26
28
4
40
1.76
5844--5959
54
2.1
54
100
0
232
30
25
8
35
1.86
6874--6923
26
1.9
26
95
0
91
48
40
0
12
1.40
8197--8302
34
3.2
34
85
6
146
22
27
25
24
2.00
11309--11342
15
2.2
16
89
5
52
41
0
8
50
1.34
11532--11629
39
2.6
38
91
4
162
22
17
35
24
1.95
11520--11629
38
2.9
38
89
4
168
22
17
35
24
1.95

Tables:   1

The End!