Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020076.1 Corchorus olitorius cultivar O-4 contig20109, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7136
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:1672 original size:3 final size:3

Alignment explanation


    Indices: 1664--1698  Score: 70
    Period size: 3  Copynumber: 11.7  Consensus size: 3

       1654 CATTTATAAC

                                                          
       1664 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
          1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA

       1699 AGTAATTCAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   32  1.00

ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31


Consensus pattern (3 bp):   
CAT

Found at i:1764 original size:26 final size:26

Alignment explanation


    Indices: 1728--1777  Score: 91
    Period size: 26  Copynumber: 1.9  Consensus size: 26

       1718 TAAATGCAAC

                                      
       1728 TTTTGCAACTCCCTTCCCACTGACGA
          1 TTTTGCAACTCCCTTCCCACTGACGA

                              *     
       1754 TTTTGCAACTCCCTTCCCTCTGAC
          1 TTTTGCAACTCCCTTCCCACTGAC

       1778 TATTCCATTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   23  1.00

ACGTcount: A:0.16, C:0.40, G:0.10, T:0.34


Consensus pattern (26 bp):   
TTTTGCAACTCCCTTCCCACTGACGA
Done.