Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020078.1 Corchorus olitorius cultivar O-4 contig20111, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2490
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:406 original size:31 final size:31

Alignment explanation


    Indices: 358--424  Score: 107
    Period size: 31  Copynumber: 2.2  Consensus size: 31

        348 TCAAAAGAAG

                *    *                  *  
        358 ATTATATATTTTTTTATGTTATATACTATAA
          1 ATTAAATATATTTTTATGTTATATACTACAA

                                           
        389 ATTAAATATATTTTTATGTTATATACTACAA
          1 ATTAAATATATTTTTATGTTATATACTACAA

                 
        420 ATTAA
          1 ATTAA

        425 TGTGATTTAT


Statistics
Matches: 33,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  31   33  1.00

ACGTcount: A:0.40, C:0.04, G:0.03, T:0.52


Consensus pattern (31 bp):   
ATTAAATATATTTTTATGTTATATACTACAA
Done.