Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020079.1 Corchorus olitorius cultivar O-4 contig20112, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15949

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2853--3935
47
22.2
47
81
9
604
49
6
20
23
1.73
2867--3959
94
11.2
93
79
9
747
48
6
20
24
1.74
2939--3407
54
9.0
54
80
10
430
46
6
20
26
1.75
2824--3366
202
2.7
202
87
2
750
47
6
20
25
1.73
3203--3316
59
1.9
59
85
3
158
50
5
21
22
1.68
3098--3408
160
1.9
160
82
6
380
45
6
21
26
1.75
2869--3951
141
7.4
141
80
9
894
48
7
20
24
1.74
3379--3959
47
12.4
47
88
0
786
49
7
20
22
1.73
3970--4207
22
11.1
22
79
5
263
57
6
21
13
1.59
3970--4031
12
5.5
12
73
21
62
58
3
20
17
1.53
3978--4033
10
5.1
11
71
16
53
57
5
19
17
1.59
3974--4205
43
5.4
42
89
5
315
58
6
21
13
1.59
3974--4205
86
2.7
86
89
2
351
58
6
21
13
1.59
4181--4281
47
2.2
44
83
11
132
54
3
19
21
1.60
12306--12341
18
2.0
18
100
0
72
11
33
5
50
1.61
14639--14683
2
23.0
2
95
4
83
48
0
0
51
1.00
15159--15203
23
2.0
23
86
0
63
55
8
17
17
1.67

Tables:   1

The End!