Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020081.1 Corchorus olitorius cultivar O-4 contig20114, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14135
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29


Found at i:10470 original size:26 final size:23

Alignment explanation


    Indices: 10440--10486  Score: 67
    Period size: 26  Copynumber: 1.9  Consensus size: 23

      10430 CTTGAAAATT

                                      
      10440 TGAAAAACTTTGATGGATGAGATGGA
          1 TGAAAAAC-TTGAT-GAT-AGATGGA

                                 
      10466 TGAAAAACTTGATGATAGATG
          1 TGAAAAACTTGATGATAGATG

      10487 AATAGAAGGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  23    5  0.24
  24    3  0.14
  25    5  0.24
  26    8  0.38

ACGTcount: A:0.40, C:0.04, G:0.28, T:0.28


Consensus pattern (23 bp):   
TGAAAAACTTGATGATAGATGGA
Done.