Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020082.1 Corchorus olitorius cultivar O-4 contig20115, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53783

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1376--1409
15
2.3
15
94
0
59
23
8
0
67
1.18
8235--8268
6
5.8
6
89
6
52
0
26
52
20
1.46
8235--8269
17
2.1
17
94
0
61
0
25
51
22
1.48
8711--8782
31
2.3
31
75
13
76
61
9
2
26
1.41
8848--8914
26
2.5
27
82
2
82
17
16
23
41
1.89
10915--10983
22
3.1
22
100
0
138
34
24
26
14
1.94
11610--11651
21
2.0
21
85
4
57
21
11
2
64
1.38
18417--18465
19
2.6
19
100
0
98
38
10
18
32
1.84
18765--18796
7
4.4
7
92
7
55
62
12
0
25
1.30
18765--18796
15
2.2
14
94
5
55
62
12
0
25
1.30
19468--19589
51
2.4
50
78
4
138
31
17
16
35
1.92
20517--21245
69
10.6
69
90
0
1109
25
29
17
27
1.98
21648--21714
26
2.5
27
82
2
82
17
14
26
40
1.89
22671--22840
42
4.0
43
90
5
265
40
12
14
32
1.83
22671--22840
86
2.0
87
91
3
281
40
12
14
32
1.83
29361--29387
13
2.1
13
100
0
54
40
22
22
14
1.90
32267--32303
18
2.0
20
84
10
51
78
5
8
8
1.09
33229--33260
2
16.0
2
93
0
55
46
0
3
50
1.17
36860--36885
12
2.2
12
100
0
52
7
15
7
69
1.35
43113--43158
22
2.1
21
84
4
56
28
43
17
10
1.82
44120--44156
18
2.1
18
89
0
56
45
5
10
37
1.62
45702--45727
12
2.2
12
100
0
52
7
15
7
69
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47043--47074
16
1.9
17
93
6
57
40
25
15
18
1.90
47829--47887
4
15.2
4
89
7
77
25
5
23
45
1.73

Tables:   1

The End!